close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18319.1KEGG: pna:Pnap_2770 membrane protein-like protein. (135 aa)    
Predicted Functional Partners:
ACS18318.1
PFAM: FAD linked oxidase domain protein; KEGG: aav:Aave_1452 FAD linked oxidase domain-containing protein.
       0.861
ACS18416.1
TIGRFAM: phasin family protein; KEGG: dia:Dtpsy_1366 phasin family protein.
  
     0.726
ACS18796.1
KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein.
  
     0.707
ACS18104.1
KEGG: dac:Daci_2180 hypothetical protein.
  
     0.692
ACS18219.1
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein.
  
     0.692
ACS17588.1
PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II.
  
     0.681
ACS19443.1
KEGG: pol:Bpro_4300 hypothetical protein.
  
     0.669
ACS21073.1
PFAM: Domain of unknown function DUF1841; KEGG: aav:Aave_3950 hypothetical protein.
  
     0.663
ACS18261.1
KEGG: pol:Bpro_1783 hypothetical protein.
  
     0.661
ACS18320.1
TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative.
  
    0.651
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.