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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18359.1PFAM: protein of unknown function DUF444; KEGG: lch:Lcho_0200 hypothetical protein; Belongs to the UPF0229 family. (430 aa)    
Predicted Functional Partners:
ACS18358.1
PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein.
 
  
 0.996
ACS18360.1
PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: lch:Lcho_0199 putative serine protein kinase, PrkA.
 
  
 0.994
ACS18477.1
PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pol:Bpro_2186 PhoH-like protein.
   
    0.570
ACS18788.1
PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB.
   
    0.562
ACS18789.1
KEGG: aav:Aave_2453 hypothetical protein.
   
    0.487
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
    0.461
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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