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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18391.1PFAM: secretion protein HlyD family protein; KEGG: bbr:BB2383 HlyD family secretion protein. (336 aa)    
Predicted Functional Partners:
ACS18389.1
PFAM: ABC-2 type transporter; KEGG: bbr:BB2381 hypothetical protein.
 
  
 0.921
ACS18390.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1421 ABC transporter related.
 
  
 0.921
ACS18388.1
PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A1419 hypothetical protein.
 
  
 0.912
ACS18387.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bbr:BB2379 outer membrane efflux protein.
 
 
 0.808
ACS20094.1
PFAM: protein of unknown function DUF214; KEGG: pna:Pnap_1153 hypothetical protein.
  
  
 0.705
ACS18392.1
PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: pfl:PFL_5951 TetR family transcriptional regulator.
 
   
 0.695
ACS20880.1
KEGG: bpl:BURPS1106A_A0996 glycosyl transferase, group 2 family protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: glycosyl transferase family 2; outer membrane efflux protein.
 
 
 0.677
ACS21437.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ajs:Ajs_0321 RND efflux system outer membrane lipoprotein.
 
 
 0.663
ACS19190.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: hypothetical protein.
 
 
 0.652
ACS20339.1
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC.
  
 
 0.650
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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