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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18452.1PFAM: protein of unknown function UPF0005; KEGG: aav:Aave_3316 hypothetical protein; Belongs to the BI1 family. (233 aa)    
Predicted Functional Partners:
ACS18453.1
PFAM: protein of unknown function DUF336; KEGG: rfr:Rfer_2775 hypothetical protein.
 
     0.648
ACS20741.1
PFAM: import inner membrane translocase subunit Tim44; KEGG: pna:Pnap_0782 import inner membrane translocase, subunit Tim44.
 
  
 0.575
htpX
PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: pna:Pnap_3448 heat shock protein HtpX; Belongs to the peptidase M48B family.
  
  
 0.551
ACS20376.1
PFAM: Colicin V production protein; KEGG: vei:Veis_3372 colicin V production protein.
  
    0.492
ACS18133.1
PFAM: peptidase M48 Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase.
 
  
 0.489
ACS17809.1
PFAM: toluene tolerance family protein; KEGG: rfr:Rfer_2063 toluene tolerance.
  
     0.476
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
  
 0.450
msrB
KEGG: aav:Aave_2948 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
   0.445
ACS18966.1
PFAM: Methyltransferase type 11; KEGG: pna:Pnap_1679 methyltransferase type 11.
 
     0.416
ACS17929.1
PFAM: peptidase M48 Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p.
  
  
 0.404
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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