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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18477.1PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pol:Bpro_2186 PhoH-like protein. (595 aa)    
Predicted Functional Partners:
ACS18478.1
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.632
ACS18360.1
PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: lch:Lcho_0199 putative serine protein kinase, PrkA.
  
  
 0.626
ACS18359.1
PFAM: protein of unknown function DUF444; KEGG: lch:Lcho_0200 hypothetical protein; Belongs to the UPF0229 family.
   
    0.570
ACS18479.1
PFAM: protein of unknown function DUF498; KEGG: aav:Aave_1236 hypothetical protein.
 
     0.548
ACS18358.1
PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein.
   
    0.517
ACS18474.1
PFAM: transcription activator effector binding; KEGG: dia:Dtpsy_0189 transcription activator effector binding.
 
     0.497
rlmD
RNA methyltransferase, TrmA family; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
  
     0.494
ACS18476.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_0170 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.487
ACS18475.1
PFAM: protein of unknown function DUF55; KEGG: rlt:Rleg2_5979 protein of unknown function DUF55; Belongs to the UPF0310 family.
       0.479
ACS17245.1
TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: rfr:Rfer_3598 preprotein translocase subunit SecE; Belongs to the SecE/SEC61-gamma family.
  
     0.438
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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