STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmITIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (67 aa)    
Predicted Functional Partners:
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.997
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: vei:Veis_1757 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.990
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 50S ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.989
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.988
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.988
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: dac:Daci_0399 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.988
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.987
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: vei:Veis_3939 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.987
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dia:Dtpsy_2347 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 0.987
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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