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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18548.1PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_1369 ABC transporter membrane protein. (275 aa)    
Predicted Functional Partners:
ACS18549.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce4768 ABC-type transporter, ATP-binding protein.
  
 0.962
ACS18550.1
PFAM: NMT1/THI5 like domain protein; KEGG: scl:sce4103 ABC transporter, periplasmic substrate-binding protein.
 
  
 0.945
ACS20459.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_4285 ABC transporter related.
  
 0.855
ACS22110.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP1387 ATP-binding component of ABC transporter.
  
 0.841
ACS18557.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2157 sulfate ester ABC transporter ATPase.
  
 0.840
ACS18510.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0618 ABC transporter related.
  
 0.838
ACS16819.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1045 ABC transporter related.
  
 0.833
ACS22618.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3092 ABC transporter related.
  
 0.828
ACS16767.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0384 ABC transporter related.
  
 0.810
ACS18962.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2273 ABC transporter related.
  
 0.806
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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