close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18588.1PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: cti:RALTA_A1639 low molecular weight protein-tyrosine-phosphatase (EPS I polysaccharide export protein). (144 aa)    
Predicted Functional Partners:
ACS18587.1
KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
 
 0.958
ACS17841.1
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: cti:RALTA_A1639 low molecular weight protein-tyrosine-phosphatase (EPS I polysaccharide export protein).
  
  
 
0.902
ACS17842.1
KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
 
 0.827
ACS19808.1
KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
 
 
 0.822
ACS18589.1
PFAM: protein of unknown function DUF940 membrane lipoprotein putative; protein of unknown function DUF1017; KEGG: bte:BTH_II1988 OtnG protein.
  
  
 0.729
ACS18950.1
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rfr:Rfer_2898 thioredoxin; Belongs to the thioredoxin family.
 
 
 0.682
ACS18590.1
Lipoprotein; KEGG: bps:BPSS0416 lipoprotein.
       0.681
ACS18609.1
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: reh:H16_A2176 arsenite efflux pump ACR3.
  
  
 0.645
ACS18322.1
PFAM: Thioredoxin domain; KEGG: pna:Pnap_2768 hypothetical protein.
  
 
 0.638
ACS21461.1
TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pna:Pnap_1332 thioredoxin.
  
 
 0.638
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.