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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18591.1PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0031 type III effector Hrp-dependent outers. (454 aa)    
Predicted Functional Partners:
ACS18592.1
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pol:Bpro_0032 ribulose 1,5-bisphosphate carboxylase large subunit; Belongs to the RuBisCO large chain family.
 
   
 0.953
ACS18593.1
KEGG: pol:Bpro_0033 hypothetical protein.
 
     0.935
ACS18596.1
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: pol:Bpro_0036 transcriptional regulator, LacI family.
 
   
 0.832
ACS21745.1
PFAM: class II aldolase/adducin family protein; KEGG: rfr:Rfer_0444 putative aldolase.
 
  
 0.826
ACS18595.1
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_0035 TRAP dicarboxylate transporter, DctP subunit.
 
     0.704
ACS18594.1
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_0034 TRAP C4-dicarboxylate transport system permease DctM subunit.
       0.699
ACS21747.1
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: vei:Veis_3138 NAD-dependent epimerase/dehydratase.
 
    0.639
ACS19912.1
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: rfr:Rfer_0451 NAD-dependent epimerase/dehydratase.
 
    0.611
ACS21744.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.481
ACS20569.1
KEGG: dac:Daci_2118 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.
 
  
 0.463
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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