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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18592.1PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pol:Bpro_0032 ribulose 1,5-bisphosphate carboxylase large subunit; Belongs to the RuBisCO large chain family. (423 aa)    
Predicted Functional Partners:
ACS19650.1
PFAM: ribulose bisphosphate carboxylase small chain; KEGG: mpt:Mpe_A2783 ribulose 1,5-bisphosphate carboxylase small subunit.
 
 0.994
ACS19644.1
PFAM: phosphoribulokinase/uridine kinase; KEGG: mpt:Mpe_A2789 phosphoribulokinase.
 
 
 0.967
ACS18591.1
PFAM: type III effector Hrp-dependent outers; KEGG: pol:Bpro_0031 type III effector Hrp-dependent outers.
 
   
 0.953
ACS18593.1
KEGG: pol:Bpro_0033 hypothetical protein.
 
     0.932
cbbL
Ribulose-bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
  
  
 
0.926
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.916
ACS19646.1
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A2787 phosphoglycolate phosphatase.
    
 0.916
pgk
PFAM: phosphoglycerate kinase; KEGG: mpt:Mpe_A2792 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.912
pgk-2
PFAM: phosphoglycerate kinase; KEGG: ajs:Ajs_4056 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.912
ACS18031.1
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rfr:Rfer_1722 HAD family hydrolase.
    
 0.908
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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