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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18664.1KEGG: pol:Bpro_2136 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain. (213 aa)    
Predicted Functional Partners:
ACS18663.1
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_2124 fumarylacetoacetate (FAA) hydrolase.
  
 
 0.968
ACS16952.1
KEGG: pol:Bpro_2997 homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase.
 
 
 0.946
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.939
ACS17016.1
TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2 conserved barrel domain protein; KEGG: pae:PA2470 gentisate 1,2-dioxygenase.
 
  
 0.936
ACS17313.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: vei:Veis_4214 cupin 2 domain-containing protein.
 
  
 0.934
ACS17017.1
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rso:RSc1086 putative isomerase-decarboxylase.
  
 
 0.933
ACS20168.1
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_1732 fumarylacetoacetate (FAA) hydrolase.
  
 
 0.926
ACS21371.1
KEGG: aav:Aave_4191 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.904
ACS16950.1
Fumarylacetoacetase; KEGG: aav:Aave_0256 fumarylacetoacetate hydrolase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
 
 0.871
ACS16763.1
Fumarylacetoacetase; KEGG: bpy:Bphyt_2380 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase.
 
 0.866
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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