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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (357 aa)    
Predicted Functional Partners:
ACS18543.1
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mms:mma_2535 selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
 0.919
ACS20545.1
PFAM: aminotransferase class V; KEGG: aav:Aave_0206 aminotransferase, class V.
    
 0.919
ACS17934.1
TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A1118 thioredoxin reductase.
     
 0.912
ACS18931.1
KEGG: mpt:Mpe_A0012 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: cyclic nucleotide-binding.
     
 0.912
ACS19029.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rme:Rmet_2452 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.912
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
    
 0.898
ACS18000.1
TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: ajs:Ajs_3480 tRNA 2-selenouridine synthase; Belongs to the SelU family.
 
   
 0.875
ACS18697.1
PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1614 glycosyl transferase, group 1.
       0.803
ACS18699.1
TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_1723 phosphonate ABC transporter, periplasmic phosphonate-binding protein.
 
     0.656
ACS18698.1
PFAM: protein of unknown function DUF323; KEGG: lch:Lcho_1725 hypothetical protein.
       0.587
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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