close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18709.1TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dac:Daci_4462 TonB-dependent siderophore receptor. (722 aa)    
Predicted Functional Partners:
ACS18710.1
PFAM: extracellular solute-binding protein family 5; KEGG: mpo:Mpop_3809 extracellular solute-binding protein family 5.
 
     0.801
ACS20358.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3729 amino acid adenylation domain-containing protein.
 
  
 0.796
ACS18713.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_4004 ABC transporter-related protein.
       0.777
ACS18711.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4002 binding-protein-dependent transport systems inner membrane component.
       0.773
ACS18712.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4003 binding-protein-dependent transport systems inner membrane component.
       0.773
ACS21213.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pap:PSPA7_0271 TonB-dependent receptor.
 
  
 0.657
ACS18459.1
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: lch:Lcho_1570 2OG-Fe(II) oxygenase.
 
  
 0.655
ACS18016.1
KEGG: aav:Aave_1866 hypothetical protein.
 
     0.496
ACS17953.1
Procollagen-proline dioxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit.
  
  
 0.453
ACS20360.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3731 amino acid adenylation domain-containing protein.
  
  
 0.440
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.