Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACS18723.1KEGG: bam:Bamb_1984 hypothetical protein. (77 aa)    
Predicted Functional Partners:
ACS18724.1
Plasmid replication initiator protein-like protein; KEGG: bpt:Bpet4564 putative replication protein.
 
     0.938
ACS18726.1
KEGG: ajs:Ajs_2656 hypothetical protein.
 
     0.926
ACS18727.1
KEGG: dac:Daci_2718 hypothetical protein.
 
     0.926
ACS18728.1
KEGG: pna:Pnap_4170 putative conjugal transfer TRAF transmembrane protein.
 
     0.926
ACS18725.1
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bpt:Bpet4565 putative partition protein.
 
     0.920
ACS18729.1
KEGG: nwi:Nwi_2851 hypothetical protein.
 
     0.868
ACS18719.1
PFAM: protein of unknown function DUF736; KEGG: pna:Pnap_4161 hypothetical protein.
 
     0.786
ACS18722.1
KEGG: aav:Aave_0683 putative lipoprotein.
 
     0.782
ACS17262.1
KEGG: pau:PA14_31230 hypothetical protein.
 
     0.780
ACS18717.1
PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: pna:Pnap_4159 nuclease.
 
     0.779
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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