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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18763.1PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2162 GCN5-related N-acetyltransferase. (158 aa)    
Predicted Functional Partners:
ACS18764.1
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: rfr:Rfer_2804 arginine/ornithine transport system ATPase.
       0.787
ACS18762.1
methylmalonyl-CoA mutase, large subunit; KEGG: pol:Bpro_2161 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
       0.771
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.740
panD-2
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
 
 0.740
ACS17822.1
KEGG: bxe:Bxe_A2255 ATPase, RecF-like.
   
    0.738
ACS18765.1
PFAM: carboxyl transferase; KEGG: ajs:Ajs_2042 carboxyl transferase.
     
 0.665
ACS18768.1
KEGG: rfr:Rfer_2801 lactoylglutathione lyase.
     
 0.603
ACS18766.1
TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: aav:Aave_2515 acetyl-CoA carboxylase, biotin carboxylase.
  
    0.598
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
    0.595
ACS19896.1
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: reu:Reut_C6143 hypothetical protein.
 
   
 0.533
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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