close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18773.1TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: aav:Aave_2488 polyhydroxyalkanoate depolymerase, intracellular. (471 aa)    
Predicted Functional Partners:
ACS18667.1
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.966
ACS18333.1
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pna:Pnap_2756 polyhydroxyalkanoate depolymerase, intracellular.
  
  
 
0.907
ACS18772.1
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
       0.861
ACS18771.1
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dac:Daci_4577 lysine exporter protein LysE/YggA.
       0.784
ACS18774.1
PFAM: aminotransferase class I and II; KEGG: pna:Pnap_1562 aromatic amino acid aminotransferase.
       0.503
ACS19215.1
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR.
 
   
 0.446
ACS19858.1
PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 putative transmembrane protein.
  
     0.436
ACS18077.1
PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339.
  
     0.419
ACS19859.1
KEGG: bxe:Bxe_B0802 hypothetical protein.
  
     0.418
ACS19856.1
KEGG: rso:RS03060 hypothetical protein.
  
     0.402
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.