close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18788.1PFAM: protein of unknown function DUF883 ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB. (98 aa)    
Predicted Functional Partners:
ACS18789.1
KEGG: aav:Aave_2453 hypothetical protein.
  
  
 0.951
ACS21667.1
PFAM: Ferritin Dps family protein; KEGG: pna:Pnap_0325 ferritin, Dps family protein; Belongs to the Dps family.
  
    0.873
ACS18360.1
PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; KEGG: lch:Lcho_0199 putative serine protein kinase, PrkA.
   
    0.857
ACS21552.1
PFAM: Peptidoglycan-binding LysM; transport-associated; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein.
   
  
 0.848
ACS20281.1
Peroxiredoxin; PFAM: OsmC family protein; KEGG: aav:Aave_0009 OsmC family protein.
   
  
 0.796
ACS18358.1
PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein.
   
    0.724
ACS18421.1
PFAM: CsbD family protein; KEGG: efe:EFER_4136 putative stress response protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.668
ACS19470.1
PFAM: protein of unknown function DUF1458; KEGG: pna:Pnap_0234 hypothetical protein.
  
    0.593
ACS18443.1
PFAM: Transglycosylase-associated protein; KEGG: bpy:Bphyt_4202 transglycosylase-associated protein.
  
  
 0.568
ACS18787.1
PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2706 FAD dependent oxidoreductase.
  
    0.565
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: high (94%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.