Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS18810.1KEGG: pol:Bpro_2620 hypothetical protein. (223 aa)    
Predicted Functional Partners:
ACS18809.1
PFAM: AFG1-family ATPase; KEGG: aav:Aave_3245 AFG1 family ATPase.
       0.847
ACS18808.1
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: mpt:Mpe_A2010 dihydrolipoamide dehydrogenase.
     
 0.793
ACS18807.1
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
       0.774
ACS20353.1
PFAM: ferric iron reductase; KEGG: aav:Aave_3725 ferric iron reductase protein FhuF.
  
    0.708
ACS17073.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pna:Pnap_3787 biopolymer transport protein ExbD/TolR.
  
 
 0.672
ACS18455.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_3313 biopolymer transport protein ExbD/TolR.
  
 
 0.672
ACS19267.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_2565 biopolymer transport protein ExbD/TolR.
  
 
 0.672
ACS19735.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: lch:Lcho_2942 biopolymer transport protein ExbD/TolR.
  
 
 0.672
ACS19173.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pna:Pnap_2368 TonB-dependent receptor, plug.
   
 
 0.656
ACS17072.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_0756 MotA/TolQ/ExbB proton channel.
  
 
 0.648
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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