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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18912.1RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: aca:ACP_0251 flagellar operon sigma factor FliA. (272 aa)    
Predicted Functional Partners:
ACS20814.1
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: bph:Bphy_2946 anti-sigma-28 factor, FlgM.
  
 0.994
ACS18898.1
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: hch:HCH_04080 flagellar basal-body rod protein FlgC.
 
 
 0.966
ACS18906.1
PFAM: flagellar hook capping protein; KEGG: hch:HCH_04072 flagellar hook capping protein.
 
  
 0.960
ACS20809.1
PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cti:RALTA_B0280 FlgE: flagellar hook protein.
 
  
 0.936
ACS18897.1
Flagellar basal body protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.933
ACS20811.1
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: bav:BAV1689 flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.931
ACS20788.1
TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: rme:Rmet_5298 flagellar motor switch protein FliM.
 
 
 0.928
ACS18907.1
PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: sdn:Sden_0060 protein of unknown function DUF1078-like protein.
 
  
 0.927
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
  
 
0.927
ACS20795.1
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: reu:Reut_B5634 flagellar hook-associated protein FlgK.
 
  
 0.926
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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