close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18918.1KEGG: bpy:Bphyt_3168 hypothetical protein. (263 aa)    
Predicted Functional Partners:
ACS17427.1
PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; KEGG: gbe:GbCGDNIH1_0743 glycosyltransferase.
 
  
 0.741
ACS17419.1
KEGG: pol:Bpro_3999 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-6-phosphate isomerase type II.
  
  
 0.528
ACS19818.1
KEGG: pna:Pnap_3192 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
  
  
 0.528
ACS21676.1
KEGG: bph:Bphy_5538 hypothetical protein.
  
    0.510
ACS18581.1
PFAM: sugar transferase; KEGG: ajs:Ajs_3034 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.493
ACS18917.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pnu:Pnuc_0121 TPR repeat-containing protein.
       0.493
ACS18586.1
PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_2679 polysaccharide biosynthesis protein CapD.
  
  
 0.449
ACS17418.1
PFAM: ABC-2 type transporter; KEGG: dno:DNO_0335 ABC-2 type transporter family protein.
  
  
 0.444
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.