close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS18919.1YD repeat protein; KEGG: sdn:Sden_3683 peptidoglycan-binding LysM; TIGRFAM: YD repeat protein; PFAM: Peptidoglycan-binding LysM; YD repeat-containing protein; SMART: Peptidoglycan-binding LysM. (6272 aa)    
Predicted Functional Partners:
ACS21208.1
KEGG: cja:CJA_1396 putative hemolysin; TIGRFAM: outer membrane adhesin like proteiin; PFAM: von Willebrand factor type A; Cadherin; coagulase; SMART: von Willebrand factor type A; Cadherin.
  
 0.925
ACS22514.1
TIGRFAM: conserved repeat domain protein; KEGG: pna:Pnap_0407 hypothetical protein.
     
  0.900
ACS22515.1
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: pna:Pnap_0406 hypothetical protein.
     
  0.900
ACS22531.1
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: dar:Daro_3199 VCBS.
     
  0.900
ACS17936.1
PFAM: cell divisionFtsK/SpoIIIE; KEGG: aav:Aave_3426 DNA translocase FtsK.
  
 
 0.658
ACS18913.1
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_04092 TPR repeat-containing protein.
 
  
 0.559
ACS22794.1
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: pmr:PMI0561 hypothetical protein.
  
 
 
 0.528
ACS20361.1
PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
 
 
 0.487
ACS16911.1
TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: xop:PXO_05538 rhs repeat family.
 
  
0.474
ACS18069.1
KEGG: aav:Aave_1218 putative transmembrane protein.
    
 
 0.464
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.