Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS18945.1TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dia:Dtpsy_1493 MATE efflux family protein. (447 aa)    
Predicted Functional Partners:
ACS18946.1
KEGG: rfr:Rfer_2901 putative inner membrane transmembrane protein.
 
    0.882
ACS21860.1
KEGG: xac:XAC3352 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.711
ACS18947.1
TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: aav:Aave_2635 50S ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family.
       0.696
ACS18265.1
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.645
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.562
ACS18498.1
KEGG: pol:Bpro_3303 phosphoesterase, PA-phosphatase related.
   
  
 0.540
ACS19131.1
KEGG: dac:Daci_2572 squalene synthase HpnD; TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase.
   
  
 0.540
ACS19132.1
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: dac:Daci_2573 squalene synthase HpnC.
   
  
 0.540
ACS21466.1
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: mpt:Mpe_A2021 hypothetical protein.
   
  
 0.540
ACS19449.1
PFAM: UspA domain protein; KEGG: rfr:Rfer_0916 hypothetical protein.
  
   
 0.473
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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