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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19130.1TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: pna:Pnap_2965 amine oxidase. (414 aa)    
Predicted Functional Partners:
ACS19131.1
KEGG: dac:Daci_2572 squalene synthase HpnD; TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase.
    0.961
ACS19132.1
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: dac:Daci_2573 squalene synthase HpnC.
 
    0.952
ACS19129.1
KEGG: aav:Aave_2031 hypothetical protein.
       0.773
ACS19128.1
PFAM: NIPSNAP family containing protein; KEGG: dac:Daci_4415 NIPSNAP family protein.
       0.686
ACS19443.1
KEGG: pol:Bpro_4300 hypothetical protein.
  
     0.638
ACS18028.1
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain-containing protein.
  
     0.621
ACS21886.1
PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_0430 protein of unknown function DUF583.
  
     0.595
ACS17558.1
KEGG: pol:Bpro_1065 hypothetical protein.
 
     0.588
ACS19382.1
KEGG: pna:Pnap_2002 hypothetical protein.
  
     0.569
ACS18027.1
PFAM: protein of unknown function DUF513 hemX; KEGG: vei:Veis_1038 protein of unknown function DUF513, HemX.
  
     0.553
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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