close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19212.1PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_2538 alpha/beta hydrolase fold. (319 aa)    
Predicted Functional Partners:
ACS19213.1
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.813
ACS19211.1
TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rfr:Rfer_2069 3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.694
ACS18667.1
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.683
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.594
ACS19215.1
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR.
 
     0.517
ACS21341.1
Cyclic nucleotide-binding protein; PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_3844 beta-lactamase-like.
  
  
 0.451
ACS17402.1
KEGG: aav:Aave_4509 hypothetical protein.
  
     0.445
ACS18190.1
KEGG: aav:Aave_1927 hypothetical protein.
  
     0.439
ACS21638.1
PFAM: Domain of unknown function DUF1840; KEGG: dac:Daci_1148 hypothetical protein.
  
     0.426
ACS19989.1
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like.
 
   0.425
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.