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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19289.1KEGG: mpt:Mpe_A3195 hypothetical protein. (155 aa)    
Predicted Functional Partners:
ACS19290.1
KEGG: mpt:Mpe_A3196 hypothetical protein.
       0.780
ACS19288.1
KEGG: pol:Bpro_1965 hypothetical protein.
       0.521
ACS19287.1
PFAM: protein of unknown function DUF1688; KEGG: pol:Bpro_1964 protein of unknown function DUF1688.
       0.520
ACS19291.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bpy:Bphyt_5142 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
    0.494
ACS19292.1
PFAM: protein of unknown function DUF1109; KEGG: ppw:PputW619_2193 hypothetical protein.
       0.490
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.447
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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