close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19398.1PFAM: conserved hypothetical protein; KEGG: bbr:BB3123 hypothetical protein. (332 aa)    
Predicted Functional Partners:
ACS17902.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
    0.775
ACS16980.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pna:Pnap_3237 hypothetical protein.
    0.773
ACS22938.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vei:Veis_4018 hypothetical protein.
    0.773
ACS22589.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3272 hypothetical protein.
    0.760
ACS18858.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_3009 protein of unknown function DUF112, transmembrane.
    0.717
ACS19396.1
PFAM: conserved hypothetical protein; KEGG: pna:Pnap_0869 hypothetical protein.
 
    
0.708
ACS21102.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_2797 protein of unknown function DUF112, transmembrane.
    0.673
ACS19397.1
KEGG: bbt:BBta_1130 2,3-dimethylmalate lyase.
       0.668
ACS19394.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB3125 hypothetical protein; Belongs to the CoA-transferase III family.
  
    0.661
ACS19395.1
PFAM: pyruvate carboxyltransferase; KEGG: bbr:BB3124 hydroxymethylglutaryl-CoA lyase.
       0.658
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.