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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19402.1PFAM: Endoribonuclease L-PSP; KEGG: bja:bll4888 hypothetical protein. (129 aa)    
Predicted Functional Partners:
ACS19403.1
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bpy:Bphyt_1482 alpha/beta hydrolase fold-3 domain protein; Belongs to the type-B carboxylesterase/lipase family.
  
    0.788
ACS19401.1
KEGG: dar:Daro_0369 hypothetical protein.
       0.780
ACS17864.1
TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_0655 YjgF-like protein.
  
     0.772
rutC
Endoribonuclease L-PSP; May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation.
  
     0.727
ACS22189.1
PFAM: Endoribonuclease L-PSP; KEGG: smt:Smal_3954 endoribonuclease L-PSP.
  
     0.681
ACS19400.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_1405 LysR family transcriptional regulator.
       0.535
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
  
  
 0.426
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
  0.419
ACS22135.1
TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; elongation factor G domain protein; protein synthesis factor GTP-binding; KEGG: vei:Veis_4182 elongation factor G.
   
  0.419
ACS19404.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rec:RHECIAT_CH0001066 probable zinc ABC transporter, ATP-binding protein.
       0.401
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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