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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19416.1KEGG: ajs:Ajs_2283 hypothetical protein. (67 aa)    
Predicted Functional Partners:
ACS19418.1
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase.
       0.803
ACS19415.1
PFAM: Negative transcriptional regulator; KEGG: vei:Veis_0716 FMN-binding negative transcriptional regulator.
       0.791
tadA
CMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.791
ACS19413.1
PFAM: protein of unknown function DUF336; KEGG: lch:Lcho_0150 hypothetical protein.
       0.636
ACS19414.1
SMART: Ankyrin; KEGG: pol:Bpro_4103 ankyrin.
       0.625
ACS19411.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4100 periplasmic sensor signal transduction histidine kinase.
       0.404
ACS19412.1
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: pol:Bpro_4101 two component transcriptional regulator, LuxR family.
       0.404
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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