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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadACMP/dCMP deaminase zinc-binding; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (369 aa)    
Predicted Functional Partners:
ACS18353.1
TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1230 alcohol dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
  0.944
ACS22805.1
KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone.
     
  0.900
ACS19418.1
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase.
       0.861
ACS19416.1
KEGG: ajs:Ajs_2283 hypothetical protein.
       0.791
ACS19415.1
PFAM: Negative transcriptional regulator; KEGG: vei:Veis_0716 FMN-binding negative transcriptional regulator.
       0.780
ACS19414.1
SMART: Ankyrin; KEGG: pol:Bpro_4103 ankyrin.
   
 
 0.689
hisE
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: dac:Daci_5550 phosphoribosyl-ATP pyrophosphatase.
   
  
 0.670
ACS21271.1
PFAM: PhoH family protein; KEGG: dia:Dtpsy_0492 PhoH family protein.
  
     0.654
ACS19413.1
PFAM: protein of unknown function DUF336; KEGG: lch:Lcho_0150 hypothetical protein.
       0.636
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.619
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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