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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19451.1KEGG: har:HEAR2350 putative signal peptide. (289 aa)    
Predicted Functional Partners:
ACS21691.1
KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
    
 0.584
ACS19452.1
KEGG: dia:Dtpsy_3361 hypothetical protein.
       0.541
ACS19453.1
KEGG: dia:Dtpsy_3360 hypothetical protein.
       0.541
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.540
ACS20198.1
KEGG: bxe:Bxe_B0345 hypothetical protein.
 
     0.518
ACS19795.1
KEGG: bcm:Bcenmc03_2701 hypothetical protein.
 
     0.510
ACS20185.1
PFAM: MscS Mechanosensitive ion channel; KEGG: reu:Reut_B4345 MscS mechanosensitive ion channel.
 
   
 0.481
ACS17427.1
PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; KEGG: gbe:GbCGDNIH1_0743 glycosyltransferase.
 
   
 0.464
ACS20354.1
KEGG: aav:Aave_3726 hypothetical protein.
 
     0.418
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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