Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS19485.1TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: bbr:BB0793 hypothetical protein. (780 aa)    
Predicted Functional Partners:
ACS19487.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
 
  
 0.852
ACS19489.1
KEGG: bpt:Bpet4111 hypothetical protein.
 
     0.846
ACS17178.1
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bpt:Bpet4103 hypothetical protein.
 
  
 0.841
ACS19490.1
KEGG: spe:Spro_4188 hypothetical protein.
 
   
 0.840
ACS16875.1
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bps:BPSS2105 hypothetical protein.
 
  
 0.838
ACS16874.1
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bpt:Bpet4104 hypothetical protein.
 
  
 0.825
ACS17177.1
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: bpa:BPP0728 hypothetical protein.
 
  
 0.825
ACS16859.1
PFAM: virulence protein SciE type; KEGG: bpt:Bpet4114 hypothetical protein.
 
  
 0.810
ACS17188.1
PFAM: virulence protein SciE type; KEGG: azo:azo3899 putative cytoplasmic protein,SciE.
 
  
 0.810
ACS19488.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0796 hypothetical protein.
 
     0.810
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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