close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19503.1PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: vei:Veis_3561 mandelate racemase/muconate lactonizing protein. (403 aa)    
Predicted Functional Partners:
ACS19504.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3560 mannitol dehydrogenase domain-containing protein.
 
  
 0.986
ACS17436.1
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: pol:Bpro_3967 altronate dehydratase.
 
  
 0.918
ACS18599.1
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: dac:Daci_2347 galactarate dehydratase.
 
  
 0.918
ACS21930.1
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bpy:Bphyt_2214 mandelate racemase/muconate lactonizing protein.
  
  
 
0.909
ACS17876.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bja:bll4353 2-deoxy-D-gluconate 3-dehydrogenase.
    
  0.900
ACS20924.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_3063 short-chain dehydrogenase/reductase SDR.
    
  0.900
ACS21344.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_3063 short-chain dehydrogenase/reductase SDR.
    
  0.900
ACS18344.1
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
 0.805
ACS17157.1
KEGG: pna:Pnap_3660 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.800
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.