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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19505.1KEGG: rfr:Rfer_0625 hypothetical protein. (164 aa)    
Predicted Functional Partners:
ACS19503.1
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: vei:Veis_3561 mandelate racemase/muconate lactonizing protein.
       0.645
ACS19504.1
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vei:Veis_3560 mannitol dehydrogenase domain-containing protein.
       0.645
ACS19509.1
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RS03157 hypothetical protein.
 
     0.645
ACS19506.1
KEGG: dal:Dalk_1996 transcriptional regulator, ArsR family.
       0.603
ACS19507.1
Putative transcriptional regulator, AsnC family; KEGG: rfr:Rfer_0178 MarR family transcriptional regulator.
       0.603
ACS19508.1
KEGG: azc:AZC_0517 hypothetical protein.
       0.596
ACS20299.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: par:Psyc_1330 endonuclease/exonuclease/phosphatase family protein.
  
     0.547
ACS19501.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3563 polar amino acid ABC transporter, inner membrane subunit.
       0.521
ACS19502.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3562 ABC transporter related.
       0.521
ACS18047.1
PFAM: Anti sigma-E protein RseA family protein; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA.
  
     0.498
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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