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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19514.1PFAM: Paraquat-inducible protein A; KEGG: mms:mma_1053 paraquat-inducible protein A. (238 aa)    
Predicted Functional Partners:
ACS19513.1
PFAM: Mammalian cell entry related domain protein; KEGG: mms:mma_1054 paraquat-inducible protein B.
 
  
 0.965
ACS19512.1
PFAM: protein of unknown function DUF330; KEGG: mms:mma_1055 hypothetical protein.
 
  
 0.962
ACS19515.1
PFAM: Paraquat-inducible protein A; KEGG: mms:mma_1052 hypothetical protein.
 
    
0.850
ACS19516.1
PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3366 major facilitator transporter.
       0.731
ACS19517.1
TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3365 Bcr/CflA subfamily drug resistance transporter.
       0.707
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.697
ACS19511.1
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_0667 EmrB/QacA family drug resistance transporter.
       0.485
ACS19518.1
PFAM: peptidase M48 Ste24p; KEGG: aav:Aave_1993 peptidase M48, Ste24p.
       0.421
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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