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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19553.1PFAM: Carboxylesterase type B; KEGG: dac:Daci_3304 carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. (600 aa)    
Predicted Functional Partners:
ACS18347.1
PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; KEGG: pna:Pnap_2621 3'-5' exonuclease.
    
 0.659
ACS19345.1
KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase.
    
 0.650
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.647
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.624
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.623
ACS19552.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_1799 acyl-CoA synthetase.
 
 
 
 0.610
ACS19403.1
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bpy:Bphyt_1482 alpha/beta hydrolase fold-3 domain protein; Belongs to the type-B carboxylesterase/lipase family.
 
  
 0.573
rtcA
RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
    
  0.540
ACS18184.1
KEGG: pol:Bpro_1716 hypothetical protein.
 
  
 0.504
ACS19554.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_3303 AraC family transcriptional regulator.
       0.501
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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