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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selOProtein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (494 aa)    
Predicted Functional Partners:
msrB
KEGG: aav:Aave_2948 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
  
 0.901
ACS19557.1
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.790
ACS19558.1
PFAM: BolA family protein; KEGG: dac:Daci_3299 BolA family protein; Belongs to the BolA/IbaG family.
       0.790
ACS19559.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2399 PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
   0.694
ACS19554.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: dac:Daci_3303 AraC family transcriptional regulator.
       0.591
ACS19177.1
PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
      0.405
ACS19553.1
PFAM: Carboxylesterase type B; KEGG: dac:Daci_3304 carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family.
       0.402
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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