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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19565.1TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lch:Lcho_2137 polar amino acid ABC transporter, inner membrane subunit. (332 aa)    
Predicted Functional Partners:
ACS19566.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: azo:azo1331 putative amino acid-binding protein.
 
 
 0.991
ACS19564.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2326 amino acid ABC transporter permease.
 
 
0.988
ACS22930.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05400 amino acid ABC transporter transmembrane protein.
 
0.847
ACS22431.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5210 amino acid ABC transporter, permease protein.
  
  
  0.843
ACS20654.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA4193 ABC transporter permease.
 
 
0.832
ACS18537.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5771 polar amino acid ABC transporter, inner membrane subunit.
 
0.820
ACS17483.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_4071 polar amino acid ABC transporter, inner membrane subunit.
 
 
0.816
ACS20033.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_1488 ABC transporter related.
 
  
 0.815
ACS22433.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2561 ABC transporter related.
 
  
 0.813
ACS20655.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_07351 putative ATP-binding component of ABC transporter.
 
  
 0.804
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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