| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| def | rplI | Vapar_2948 | Vapar_1821 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.817 |
| def | rplP | Vapar_2948 | Vapar_4906 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.802 |
| def | rplT | Vapar_2948 | Vapar_1873 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.838 |
| def | rplU | Vapar_2948 | Vapar_4218 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.851 |
| def | rplY | Vapar_2948 | Vapar_4346 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.802 |
| def | rpsB | Vapar_2948 | Vapar_2599 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.813 |
| def | rpsC | Vapar_2948 | Vapar_4907 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.826 |
| def | rpsT | Vapar_2948 | Vapar_1454 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.821 |
| def | rpsU | Vapar_2948 | Vapar_3540 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dia:Dtpsy_2347 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.819 |
| def | tig | Vapar_2948 | Vapar_2510 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.833 |
| rplI | def | Vapar_1821 | Vapar_2948 | Ribosomal protein L9; Binds to the 23S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.817 |
| rplI | rplP | Vapar_1821 | Vapar_4906 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.991 |
| rplI | rplT | Vapar_1821 | Vapar_1873 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.991 |
| rplI | rplU | Vapar_1821 | Vapar_4218 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
| rplI | rplY | Vapar_1821 | Vapar_4346 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.992 |
| rplI | rpsB | Vapar_1821 | Vapar_2599 | Ribosomal protein L9; Binds to the 23S rRNA. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: aav:Aave_1823 SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.989 |
| rplI | rpsC | Vapar_1821 | Vapar_4907 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.989 |
| rplI | rpsT | Vapar_1821 | Vapar_1454 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.936 |
| rplI | rpsU | Vapar_1821 | Vapar_3540 | Ribosomal protein L9; Binds to the 23S rRNA. | TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dia:Dtpsy_2347 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.956 |
| rplI | tig | Vapar_1821 | Vapar_2510 | Ribosomal protein L9; Binds to the 23S rRNA. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.972 |
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