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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19604.1PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pna:Pnap_1061 transglutaminase domain-containing protein. (302 aa)    
Predicted Functional Partners:
ACS20023.1
PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: rfr:Rfer_2497 hypothetical protein.
 
  
 0.897
ACS20020.1
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pna:Pnap_1206 hypothetical protein.
 
  
 0.849
ACS20019.1
PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403.
 
  
 0.847
ACS17162.1
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: mpt:Mpe_A0053 transglutaminase-like domain-containing protein.
 
     0.796
ACS20207.1
PFAM: 20S proteasome A and B subunits; KEGG: pna:Pnap_1358 20S proteasome, A and B subunits.
 
    0.752
mnmC
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
       0.703
ACS19602.1
Fe(II) trafficking protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.
       0.702
ACS17101.1
KEGG: mpt:Mpe_A3629 hypothetical protein.
 
     0.613
ACS19601.1
TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aav:Aave_3046 sulfate ABC transporter, periplasmic sulfate-binding protein.
       0.480
ACS19605.1
KEGG: dac:Daci_5148 hypothetical protein.
       0.452
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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