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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19620.1Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: vei:Veis_4588 RpiR family transcriptional regulator. (321 aa)    
Predicted Functional Partners:
ACS19621.1
Beta-aspartyl-peptidase; PFAM: peptidase T2 asparaginase 2; KEGG: vei:Veis_4589 peptidase T2, asparaginase 2.
 
    0.904
ACS19627.1
PFAM: peptidase M55 D-aminopeptidase; KEGG: vei:Veis_4595 peptidase M55, D-aminopeptidase.
 
     0.781
ACS19622.1
KEGG: vei:Veis_4590 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
    0.736
ACS19623.1
PFAM: extracellular solute-binding protein family 5; KEGG: vei:Veis_4591 extracellular solute-binding protein.
 
     0.696
ACS19626.1
PFAM: peptidase S58 DmpA; KEGG: vei:Veis_4594 peptidase S58, DmpA.
 
    0.594
ACS19619.1
Transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family.
     
 0.459
ACS19624.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4592 binding-protein-dependent transport systems inner membrane component.
 
     0.437
ACS19625.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4593 binding-protein-dependent transport systems inner membrane component.
 
     0.433
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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