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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19647.1KEGG: mpt:Mpe_A2786 ribulose-5-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (234 aa)    
Predicted Functional Partners:
ACS19643.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 0.984
ACS19929.1
PFAM: Transketolase domain protein; KEGG: lch:Lcho_4274 transketolase domain-containing protein.
  
 0.979
ACS19644.1
PFAM: phosphoribulokinase/uridine kinase; KEGG: mpt:Mpe_A2789 phosphoribulokinase.
  
 
 0.977
ACS21861.1
TIGRFAM: transketolase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: pna:Pnap_4056 transketolase; Belongs to the transketolase family.
 0.972
ACS19930.1
PFAM: Transketolase central region; Transketolase domain protein; KEGG: lch:Lcho_4275 transketolase central region.
 
 0.954
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.947
ACS18344.1
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.937
ACS17003.1
Xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bam:Bamb_4197 xylulokinase; Belongs to the FGGY kinase family.
 
  
 0.923
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: lch:Lcho_0132 xylulokinase.
 
  
 0.921
ACS19446.1
Phosphoketolase; PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: sus:Acid_4925 putative phosphoketolase.
    
 0.921
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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