close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19654.1PFAM: conserved hypothetical protein; KEGG: lch:Lcho_1801 hypothetical protein. (338 aa)    
Predicted Functional Partners:
ACS19656.1
KEGG: lch:Lcho_1795 hypothetical protein.
 
     0.802
ACS19657.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: lch:Lcho_3851 YVTN beta-propeller repeat-containing protein.
       0.776
ACS19655.1
PFAM: ABC-2 type transporter; KEGG: lch:Lcho_1796 ABC-2 type transporter.
       0.773
ACS18858.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_3009 protein of unknown function DUF112, transmembrane.
 
    0.758
ACS22589.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3272 hypothetical protein.
 
    0.726
ACS17902.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
 
    0.719
ACS16980.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pna:Pnap_3237 hypothetical protein.
 
    0.717
ACS22938.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vei:Veis_4018 hypothetical protein.
 
    0.713
ACS21102.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_2797 protein of unknown function DUF112, transmembrane.
 
    0.672
ACS19658.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2589 ABC efflux transporter, ATP-binding protein.
       0.658
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.