STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19656.1KEGG: lch:Lcho_1795 hypothetical protein. (393 aa)    
Predicted Functional Partners:
ACS19657.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: lch:Lcho_3851 YVTN beta-propeller repeat-containing protein.
 
  
 0.959
ACS19655.1
PFAM: ABC-2 type transporter; KEGG: lch:Lcho_1796 ABC-2 type transporter.
 
   
 0.950
ACS19658.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2589 ABC efflux transporter, ATP-binding protein.
 
  
 0.916
ACS19654.1
PFAM: conserved hypothetical protein; KEGG: lch:Lcho_1801 hypothetical protein.
 
     0.802
ACS22805.1
KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone.
 
    0.781
ACS17354.1
KEGG: mno:Mnod_2344 PQQ-dependent dehydrogenase, methanol/ethanol family; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone.
 
    0.774
ACS19659.1
PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: mpt:Mpe_A3393 putative methanol dehydrogenase protein, large subunit; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone.
 
    0.772
ACS19664.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: mpt:Mpe_A3013 hypothetical protein.
 
  
 0.771
ACS22812.1
KEGG: lch:Lcho_1789 cytochrome c550.
 
     0.765
ACS22813.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: lch:Lcho_1788 periplasmic binding protein, putative.
  
  
 0.747
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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