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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19658.1PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2589 ABC efflux transporter, ATP-binding protein. (237 aa)    
Predicted Functional Partners:
ACS19655.1
PFAM: ABC-2 type transporter; KEGG: lch:Lcho_1796 ABC-2 type transporter.
 
  
 0.946
ACS18389.1
PFAM: ABC-2 type transporter; KEGG: bbr:BB2381 hypothetical protein.
  
 0.942
ACS18388.1
PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A1419 hypothetical protein.
  
 0.920
ACS19656.1
KEGG: lch:Lcho_1795 hypothetical protein.
 
  
 0.916
ACS19657.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: lch:Lcho_3851 YVTN beta-propeller repeat-containing protein.
 
  
 0.914
ACS17026.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo1127 ABC transporter ATP-binding protein.
    
0.904
ACS18739.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related.
 
     
0.677
ACS22652.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0107 ABC transporter related.
  
    0.668
ACS19654.1
PFAM: conserved hypothetical protein; KEGG: lch:Lcho_1801 hypothetical protein.
       0.658
ACS22809.1
Nitrous oxide expression regulator, NosR; PFAM: FMN-binding domain protein; KEGG: pna:Pnap_3961 regulatory protein, putative.
 
  
 0.625
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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