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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19663.1KEGG: lch:Lcho_3110 hypothetical protein. (108 aa)    
Predicted Functional Partners:
ACS19662.1
KEGG: lch:Lcho_3109 hypothetical protein.
 
  
 0.937
ACS19661.1
SMART: extracellular solute-binding protein family 3; KEGG: mpt:Mpe_A3395 MxaJ protein.
 
    0.901
ACS19660.1
KEGG: mpt:Mpe_A3394 hypothetical protein.
 
     0.895
ACS19665.1
KEGG: mpt:Mpe_A3014 MxaD protein.
 
   
 0.878
ACS19670.1
KEGG: mpt:Mpe_A3274 hypothetical protein.
 
     0.842
ACS19659.1
PQQ-dependent dehydrogenase, methanol/ethanol family; KEGG: mpt:Mpe_A3393 putative methanol dehydrogenase protein, large subunit; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone.
 
     0.840
ACS19668.1
KEGG: mpt:Mpe_A3276 hypothetical protein.
 
     0.833
ACS19671.1
KEGG: mpt:Mpe_A3273 MxaL protein, putative.
 
     0.830
ACS19669.1
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mpt:Mpe_A3275 MxaC protein, putative.
 
     0.825
ACS19664.1
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: mpt:Mpe_A3013 hypothetical protein.
 
     0.811
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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