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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19811.1KEGG: msl:Msil_0459 hypothetical protein. (442 aa)    
Predicted Functional Partners:
ACS19813.1
Hypothetical protein.
       0.774
ACS19814.1
Hypothetical protein.
       0.772
ACS19812.1
PFAM: glycosyl transferase group 1; KEGG: xau:Xaut_3559 glycosyl transferase group 1.
       0.768
ACS19815.1
PFAM: polysaccharide biosynthesis protein; KEGG: mrd:Mrad2831_5476 polysaccharide biosynthesis protein.
       0.663
ACS19816.1
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1076 glycosyl transferase.
       0.663
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.618
ACS19808.1
KEGG: pna:Pnap_3194 exopolysaccharide transport protein family; TIGRFAM: exopolysaccharide transport protein family; capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
       0.521
ACS19817.1
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: pna:Pnap_3628 two component LuxR family transcriptional regulator.
       0.513
ACS19809.1
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: sil:SPO0838 sugar transferase.
       0.512
ACS19818.1
KEGG: pna:Pnap_3192 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein.
       0.442
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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