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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19836.1PFAM: alpha/beta hydrolase fold; KEGG: bpt:Bpet1576 hypothetical protein. (290 aa)    
Predicted Functional Partners:
ACS19837.1
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: aci:ACIAD2249 hypothetical protein.
     
 0.703
ACS21908.1
PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: scl:sce4164 hypothetical protein.
  
   0.518
ACS19838.1
Hypothetical protein.
       0.504
ACS19839.1
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rme:Rmet_1892 transcriptional regulator, LuxR family.
 
     0.447
ACS16773.1
KEGG: reh:H16_B0884 2-oxopent-4-enoate hydratase.
 
  
 0.438
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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