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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19862.1PFAM: NUDIX hydrolase; KEGG: rlt:Rleg2_0614 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (158 aa)    
Predicted Functional Partners:
ACS19860.1
KEGG: bxe:Bxe_B1808 hypothetical protein.
       0.773
ACS19861.1
KEGG: rso:RS01914 hypothetical protein.
       0.773
ACS19863.1
KEGG: pzu:PHZ_c0575 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase.
     
 0.582
ACS19858.1
PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 putative transmembrane protein.
  
    0.513
ACS19857.1
PFAM: OmpA/MotB domain protein; KEGG: azo:azo0281 hypothetical protein.
  
    0.505
ACS19859.1
KEGG: bxe:Bxe_B0802 hypothetical protein.
       0.497
ACS19856.1
KEGG: rso:RS03060 hypothetical protein.
       0.493
ACS22232.1
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: pol:Bpro_4804 transcriptional regulator, MerR family.
 
  
 0.449
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.411
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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