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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19878.1PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpt:Bpet2483 carnitine dehydratase; Belongs to the CoA-transferase III family. (464 aa)    
Predicted Functional Partners:
ACS19877.1
KEGG: sal:Sala_1369 hypothetical protein.
       0.757
ACS19879.1
3-oxoacid CoA-transferase, B subunit; KEGG: aav:Aave_3126 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase.
     
 0.584
ACS19880.1
KEGG: aav:Aave_3127 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase.
       0.567
ACS18864.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_1900 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
     0.543
ACS19881.1
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; PAS domain containing protein; KEGG: pna:Pnap_2659 putative PAS/PAC sensor protein.
       0.404
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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