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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19973.1KEGG: bac:BamMC406_6425 pentapeptide repeat-containing protein. (167 aa)    
Predicted Functional Partners:
ACS17197.1
KEGG: scl:sce8472 hypothetical protein.
 
     0.716
ACS20398.1
KEGG: bpt:Bpet4111 hypothetical protein.
 
     0.714
ACS19489.1
KEGG: bpt:Bpet4111 hypothetical protein.
 
     0.701
ACS16868.1
KEGG: bpt:Bpet4111 hypothetical protein.
 
     0.695
ACS17217.1
Hypothetical protein; KEGG: eba:ebA1686 serine/threonine protein kinase.
 
    0.683
ACS20396.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
  
     0.654
ACS19487.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
 
     0.645
ACS16866.1
PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein.
 
     0.642
ACS17195.1
PFAM: pentapeptide repeat protein; KEGG: scl:sce4933 hypothetical protein.
 
     0.634
ACS16835.1
KEGG: cja:CJA_0124 hypothetical protein.
  
     0.633
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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